Medical literature is a vast and constantly expanding source of information about diseases, their diagnoses and treatments. One of the ways to extract insights from this type of data is through mining association rules between such entities. However, existing solutions do not take into account the semantics of sentences from which entity co-occurrences are extracted. We propose a scalable solution for the automated discovery of semantic associations between different entities such as diseases and their symptoms. Our approach employs the UMLS semantic network and a binary relation classification model trained with distant supervision to validate and help ranking the most likely entity associations pairs extracted with frequency-based association rule mining algorithms. We evaluate the proposed system on the task of extracting disease-symptom associations from a collection of over 14M PubMed abstracts and validate our results against a publicly available known list of disease-symptom pairs.

Tasks, Datasets and Evaluation Metrics are important concepts for understanding experimental scientific papers. However, previous work on information extraction for scientific literature mainly focuses on the abstracts only, and does not treat datasets as a separate type of entity (Zadeh and Schumann, 2016; Luan et al., 2018). In this paper, we present a new corpus that contains domain expert annotations for Task (T), Dataset (D), Metric (M) entities 2,000 sentences extracted from NLP papers. We report experiment results on TDM extraction using a simple data augmentation strategy and apply our tagger to around 30,000 NLP papers from the ACL Anthology. The corpus is made publicly available to the community for fostering research on scientific publication summarization (Erera et al., 2019) and knowledge discovery.

Due to the fast pace at which research reports in behaviour change are published, researchers, consultants and policymakers would benefit from more automatic ways to process these reports. Automatic extraction of the reports’ intervention content, population, settings and their results etc. are essential in synthesising and summarising the literature. However, to the best of our knowledge, no unique resource exists at the moment to facilitate this synthesis. In this paper, we describe the construction of a corpus of published behaviour change intervention evaluation reports aimed at smoking cessation. We also describe and release the annotation of 57 entities, that can be used as an off-the-shelf data resource for tasks such as entity recognition, etc. Both the corpus and the annotation dataset are being made available to the community.

Population age information is an essential characteristic of clinical trials. In this paper, we focus on extracting minimum and maximum (min/max) age values for the study samples from clinical research articles. Specifically, we investigate the use of a neural network model for question answering to address this information extraction task. The min/max age QA model is trained on the massive structured clinical study records from ClinicalTrials.gov. For each article, based on multiple min and max age values extracted from the QA model, we predict both actual min/max age values for the study samples and filter out non-factual age expressions. Our system improves the results over (i) a passage retrieval based IE system and (ii) a CRF-based system by a large margin when evaluated on an annotated dataset consisting of 50 research papers on smoking cessation.

We present a novel system providing summaries for Computer Science publications. Through a qualitative user study, we identified the most valuable scenarios for discovery, exploration and understanding of scientific documents. Based on these findings, we built a system that retrieves and summarizes scientific documents for a given information need, either in form of a free-text query or by choosing categorized values such as scientific tasks, datasets and more. Our system ingested 270,000 papers, and its summarization module aims to generate concise yet detailed summaries. We validated our approach with human experts.

We present a novel system providing summaries for Computer Science publications. Through a qualitative user study, we identified the most valuable scenarios for discovery, exploration and understanding of scientific documents. Based on these findings, we built a system that retrieves and summarizes scientific documents for a given information need, either in form of a free-text query or by choosing categorized values such as scientific tasks, datasets and more. Our system ingested 270,000 papers, and its summarization module aims to generate concise yet detailed summaries. We validated our approach with human experts.

While the fast-paced inception of novel tasks and new datasets helps foster active research in a community towards interesting directions, keeping track of the abundance of research activity in different areas on different datasets is likely to become increasingly difficult. The community could greatly benefit from an automatic system able to summarize scientific results, e.g., in the form of a leaderboard. In this paper we build two datasets and develop a framework (TDMS-IE) aimed at automatically extracting task, dataset, metric and score from NLP papers, towards the automatic construction of leaderboards. Experiments show that our model outperforms several baselines by a large margin. Our model is a first step towards automatic leaderboard construction, e.g., in the NLP domain.

Having an understanding of interpersonal relationships is helpful in many contexts. Our system seeks to assist humans with that task, using textual information (e.g., case notes, speech transcripts, posts, books) as input. Specifically, our system first extracts qualitative and quantitative information elements (which we call signals) about interactions among persons, aggregates those to provide a condensed view of relationships and then enables users to explore all facets of the resulting social (multi-)graph through a visual interface.

We describe the vision and current version of a Natural Language Processing system aimed at group decision making facilitation. Borrowing from the scientific field of Decision Analysis, its essential role is to identify alternatives and criteria associated with a given decision, to keep track of who proposed them and of the expressed sentiment towards them. Based on this information, the system can help identify agreement and dissent or recommend an alternative. Overall, it seeks to help a group reach a decision in a natural yet auditable fashion.

In this paper, we present a novel approach to multi-word terminology extraction combining a well-known automatic term recognition approach, the C--NC value method, with a contrastive ranking technique, aimed at refining obtained results either by filtering noise due to common words or by discerning between semantically different types of terms within heterogeneous terminologies. Differently from other contrastive methods proposed in the literature that focus on single terms to overcome the multi-word terms' sparsity problem, the proposed contrastive function is able to handle variation in low frequency events by directly operating on pre-selected multi-word terms. This methodology has been tested in two case studies carried out in the History of Art and Legal domains. Evaluation of achieved results showed that the proposed two--stage approach improves significantly multi--word term extraction results. In particular, for what concerns the legal domain it provides an answer to a well-known problem in the semi--automatic construction of legal ontologies, namely that of singling out law terms from terms of the specific domain being regulated.