Difference between revisions of "BioNLP 2023"
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[[SIGBIOMED]] | [[SIGBIOMED]] | ||
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==BIONLP 2016 == | ==BIONLP 2016 == | ||
An ACL 2016 Workshop associated with the [[SIGBIOMED]] special interest group Featuring two associated tasks: [http://www.bioasq.org/workshop/ BioASQ] (http://www.bioasq.org/workshop) and [http://2016.bionlp-st.org/ BioNLP-ST] (http://2016.bionlp-st.org). | An ACL 2016 Workshop associated with the [[SIGBIOMED]] special interest group Featuring two associated tasks: [http://www.bioasq.org/workshop/ BioASQ] (http://www.bioasq.org/workshop) and [http://2016.bionlp-st.org/ BioNLP-ST] (http://2016.bionlp-st.org). | ||
| − | Berlin, Germany, August 12 -13, 2016 | + | Berlin, Germany, August 12 -13, 2016 |
===IMPORTANT DATES=== | ===IMPORTANT DATES=== | ||
| − | + | * Submission deadline: Sunday, May 8, 2016, 11:59 PM Eastern US | |
* Notification of acceptance: Monday, June 13, 2016 | * Notification of acceptance: Monday, June 13, 2016 | ||
| − | * Camera-ready copy due from authors: Wednesday, June 22, 2016 | + | * Camera-ready copy due from authors: Wednesday, June 22, 2016 |
* BioNLP workshop: Friday, August 12, 2016 | * BioNLP workshop: Friday, August 12, 2016 | ||
* BioNLP-ST and BioASQ workshop: Saturday August 13, 2016 | * BioNLP-ST and BioASQ workshop: Saturday August 13, 2016 | ||
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<tr><td valign=top width=100> </td><td valign=top align=left><i>Relation extraction from clinical texts using domain invariant convolutional neural network</i><br> | <tr><td valign=top width=100> </td><td valign=top align=left><i>Relation extraction from clinical texts using domain invariant convolutional neural network</i><br> | ||
Sunil Sahu, Ashish Anand, Krishnadev Oruganty and Mahanandeeshwar Gattu</td></tr> | Sunil Sahu, Ashish Anand, Krishnadev Oruganty and Mahanandeeshwar Gattu</td></tr> | ||
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| + | <tr><td valign=top width=100> </td><td valign=top align=left><i>Results of the 4th edition of BioASQ Challenge</i><br>Anastasia Krithara, Anastasios Nentidis, Georgios Paliouras and Ioannis Kakadiaris</td></tr> | ||
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| + | <tr><td valign=top width=100> </td> <td><b>All August 13 talks are also presented as posters on August 12 and August 13</b></td></tr> | ||
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</table> | </table> | ||
| − | ==BioASQ / BioNLP-ST Workshop Program== | + | ==BioASQ / BioNLP-ST Workshop Program, August 13== |
<table> | <table> | ||
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<tr><td valign=top width=100>14:30-14:45</td> <td>VERSE: Event and relation extraction in the BioNLP 2016 Shared Task<br>Jake Lever and Steven JM Jones</td></tr> | <tr><td valign=top width=100>14:30-14:45</td> <td>VERSE: Event and relation extraction in the BioNLP 2016 Shared Task<br>Jake Lever and Steven JM Jones</td></tr> | ||
<tr><td valign=top width=100>14:45-15:00</td> <td>A dictionary- and rule-based system for identification of bacteria and habitats in text<br>Helen Cook, Evangelos Pafilis and Lars Juhl Jensen</td></tr> | <tr><td valign=top width=100>14:45-15:00</td> <td>A dictionary- and rule-based system for identification of bacteria and habitats in text<br>Helen Cook, Evangelos Pafilis and Lars Juhl Jensen</td></tr> | ||
| − | <tr><td valign=top width=100>15:00-15:15</td> <td> | + | <tr><td valign=top width=100>15:00-15:15</td> <td>Extraction of Regulatory Events Using Kernel-based Classifiers and Distant Supervision<br>Andre Lamurias, Miguel J. Rodrigues, Luka A. Clarke and Francisco M Couto</td></tr> |
| − | <tr><td valign=top width=100>15:15-15:30</td> <td> | + | <tr><td valign=top width=100>15:15-15:30</td> <td>Deep Learning With Minimal Training Data: TurkuNLP Entry in The BioNLP Shared Task 2016<br>Farrokh Mehryary, Jari Björne, Sampo Pyysalo, Tapio Salakoski and Filip Ginter</td></tr> |
<tr><td valign=top width=100>'''15:30-16:00'''</td> <td>'''Coffee break'''</td></tr> | <tr><td valign=top width=100>'''15:30-16:00'''</td> <td>'''Coffee break'''</td></tr> | ||
<tr><td valign=top width=100>16:00-17:00</td> <td>'''BioNLP-ST participant session 2'''</td></tr> | <tr><td valign=top width=100>16:00-17:00</td> <td>'''BioNLP-ST participant session 2'''</td></tr> | ||
| − | <tr><td valign=top width=100>16:00-16:15</td> <td> | + | <tr><td valign=top width=100>16:00-16:15</td><td>Identification of mentions and relations between bacteria and biotope from PubMed abstracts<br>Cyril Grouin</td></tr> |
<tr><td valign=top width=100>16:15-16:30</td> <td>SeeDev Binary Event Extraction Using SVMs and a Rich Feature set<br>Nagesh Panyam Chandrasekarasastry, Gitansh Khirbat, Karin Verspoor, Trevor Cohn and Kotagiri Ramamohanarao</td></tr> | <tr><td valign=top width=100>16:15-16:30</td> <td>SeeDev Binary Event Extraction Using SVMs and a Rich Feature set<br>Nagesh Panyam Chandrasekarasastry, Gitansh Khirbat, Karin Verspoor, Trevor Cohn and Kotagiri Ramamohanarao</td></tr> | ||
| − | <tr><td valign=top width=100>16:30-16:45</td> <td> | + | <tr><td valign=top width=100>16:30-16:45</td> <td>Ontology Based Categorization of Bacteria and Habitat Entities using Information Retrieval Techniques<br>Mert Tiftikci, Hakan Şahin, Berfu Büyüköz, Alper Yayıkçı and Arzucan Özgür</td></tr> |
<tr><td valign=top width=100>16:45-17:00</td> <td>DUTIR in BioNLP-ST 2016: Utilizing convolutional network and distributed representation to extract complicate relations<br>Honglei Li, Jianhai Zhang, Jian Wang, Hongfei Lin and Zhihao Yang</td></tr> | <tr><td valign=top width=100>16:45-17:00</td> <td>DUTIR in BioNLP-ST 2016: Utilizing convolutional network and distributed representation to extract complicate relations<br>Honglei Li, Jianhai Zhang, Jian Wang, Hongfei Lin and Zhihao Yang</td></tr> | ||
<tr><td valign=top width=100>'''17:00-17:30'''</td> <td><b>Closing session</b></td></tr> | <tr><td valign=top width=100>'''17:00-17:30'''</td> <td><b>Closing session</b></td></tr> | ||
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</table> | </table> | ||
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==WORKSHOP OVERVIEW AND SCOPE== | ==WORKSHOP OVERVIEW AND SCOPE== | ||
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* Translating NLP research to practice | * Translating NLP research to practice | ||
* Theoretical underpinnings of biomedical language processing | * Theoretical underpinnings of biomedical language processing | ||
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<!-- <h5>SUBMISSION INSTRUCTIONS</h5> | <!-- <h5>SUBMISSION INSTRUCTIONS</h5> | ||
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Dual submission policy: papers may <b>NOT</b> be submitted to the BioNLP 2016 workshop if they are or will be concurrently submitted to another meeting or publication. --> | Dual submission policy: papers may <b>NOT</b> be submitted to the BioNLP 2016 workshop if they are or will be concurrently submitted to another meeting or publication. --> | ||
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<b>Program Committee:</b> | <b>Program Committee:</b> | ||
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* Anastasia Krithara, NCSR "Demokritos", Greece | * Anastasia Krithara, NCSR "Demokritos", Greece | ||
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<!-- ==BIONLP 2015 Workshop Schedule== | <!-- ==BIONLP 2015 Workshop Schedule== | ||