Difference between revisions of "BioNLP 2023"
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| Line 18: | Line 18: | ||
===Program Committee=== | ===Program Committee=== | ||
| − | * Hadi Amiri, Harvard Medical School, USA | + | <!-- * Hadi Amiri, Harvard Medical School, USA --> |
* Sophia Ananiadou, National Centre for Text Mining and University of Manchester, UK | * Sophia Ananiadou, National Centre for Text Mining and University of Manchester, UK | ||
* Emilia Apostolova, Language.ai, USA | * Emilia Apostolova, Language.ai, USA | ||
* Eiji Aramaki, University of Tokyo, Japan | * Eiji Aramaki, University of Tokyo, Japan | ||
| − | + | <!-- * Asma Ben Abacha, US National Library of Medicine --> | |
| − | + | <!-- * Cosmin (Adi) Bejan, Vanderbilt University, Nashville, TN --> | |
* Siamak Barzegar, Barcelona Supercomputing Center, Spain | * Siamak Barzegar, Barcelona Supercomputing Center, Spain | ||
<!-- * Sai Bhaskar, Carnegie Mellon University, Pittsburgh, PA --> | <!-- * Sai Bhaskar, Carnegie Mellon University, Pittsburgh, PA --> | ||
| Line 35: | Line 35: | ||
* Brian Connolly, Kroger Digital, USA | * Brian Connolly, Kroger Digital, USA | ||
* Viviana Cotik, University of Buenos Aires, Argentina | * Viviana Cotik, University of Buenos Aires, Argentina | ||
| + | * Manirupa Das, Amazon Search, Seattle, WA, USA | ||
* Dina Demner-Fushman, US National Library of Medicine | * Dina Demner-Fushman, US National Library of Medicine | ||
| + | * Bart Desmet, Clinical Center, National Institutes of Health, USA | ||
<!-- * Graciela Gonzalez-Hernandez, University of Pennsylvania, USA --> | <!-- * Graciela Gonzalez-Hernandez, University of Pennsylvania, USA --> | ||
* Travis Goodwin, The University of Texas at Dallas, USA | * Travis Goodwin, The University of Texas at Dallas, USA | ||
| Line 42: | Line 44: | ||
* Tudor Groza, The Garvan Institute of Medical Research, Australia | * Tudor Groza, The Garvan Institute of Medical Research, Australia | ||
<!-- * Ankita Gupta, Samsung Research, Bangalore, India --> | <!-- * Ankita Gupta, Samsung Research, Bangalore, India --> | ||
| − | * Sadid Hasan, Philips Research, Cambridge, MA | + | <!-- * Sadid Hasan, Philips Research, Cambridge, MA --> |
* Antonio Jimeno Yepes, IBM, Melbourne Area, Australia | * Antonio Jimeno Yepes, IBM, Melbourne Area, Australia | ||
| − | * Meizhi Ju, National Centre for Text Mining and University of Manchester, UK | + | <!-- * Meizhi Ju, National Centre for Text Mining and University of Manchester, UK --> |
* Will Kearns, University of Washington, USA | * Will Kearns, University of Washington, USA | ||
| − | * Halil Kilicoglu, | + | * Halil Kilicoglu, University of Illinois at Urbana-Champaign, USA |
* Ari Klein, University of Pennsylvania, USA | * Ari Klein, University of Pennsylvania, USA | ||
| − | + | <!-- * Zfania Tom Korach, Harvard Medical School, USA --> | |
* André Lamúrias, University of Lisbon, Portugal | * André Lamúrias, University of Lisbon, Portugal | ||
* Majid Latifi, Trinity College Dublin, Ireland | * Majid Latifi, Trinity College Dublin, Ireland | ||
* Alberto Lavelli, FBK-ICT, Italy | * Alberto Lavelli, FBK-ICT, Italy | ||
| − | * Robert Leaman, US National Library of Medicine | + | <!-- * Robert Leaman, US National Library of Medicine --> |
* Ulf Leser, Humboldt-Universität zu Berlin, Germany | * Ulf Leser, Humboldt-Universität zu Berlin, Germany | ||
* Gal Levy-Fix, Columbia University, NY | * Gal Levy-Fix, Columbia University, NY | ||
| Line 60: | Line 62: | ||
<!-- * Roser Morante, VU University Amsterdam, Netherlands --> | <!-- * Roser Morante, VU University Amsterdam, Netherlands --> | ||
* Danielle L Mowery, VA Salt Lake City Health Care System, USA | * Danielle L Mowery, VA Salt Lake City Health Care System, USA | ||
| − | + | <!-- * Yassine M'Rabet, US National Library of Medicine --> | |
* Aurelie Neveol, LIMSI - CNRS, France | * Aurelie Neveol, LIMSI - CNRS, France | ||
* Claire Nédellec, INRA, France | * Claire Nédellec, INRA, France | ||
| Line 67: | Line 69: | ||
* Nhung Nguyen, The University of Manchester, UK | * Nhung Nguyen, The University of Manchester, UK | ||
* Karen O'Connor, University of Pennsylvania, USA | * Karen O'Connor, University of Pennsylvania, USA | ||
| + | * Naoaki Okazaki, Tokyo Institute of Technology, Japan | ||
* Yifan Peng, US National Library of Medicine | * Yifan Peng, US National Library of Medicine | ||
* Laura Plaza, UNED, Madrid, Spain | * Laura Plaza, UNED, Madrid, Spain | ||
| − | + | <!-- * Sampo Pyysalo, University of Cambridge, UK --> | |
| − | * Alastair Rae, US National Library of Medicine | + | <!-- * Alastair Rae, US National Library of Medicine --> |
| + | * Bastien Rance, European Hospital Georges Pompidou, France | ||
* Francisco J. Ribadas-Pena, University of Vigo, Spain | * Francisco J. Ribadas-Pena, University of Vigo, Spain | ||
| − | + | * Fabio Rinaldi, University of Zurich, Switzerland | |
<!-- * Angus Roberts, The University of Sheffield, UK --> | <!-- * Angus Roberts, The University of Sheffield, UK --> | ||
* Kirk Roberts, The University of Texas Health Science Center at Houston, USA | * Kirk Roberts, The University of Texas Health Science Center at Houston, USA | ||
* Roland Roller, DFKI GmbH, Berlin, Germany | * Roland Roller, DFKI GmbH, Berlin, Germany | ||
| − | * Sumegh Roychowdhury, Indian Institute of Technology Kharagpur | + | <!-- * Sumegh Roychowdhury, Indian Institute of Technology Kharagpur --> |
<!-- * Rashi Rungta, Carnegie Mellon University, Pittsburgh, PA --> | <!-- * Rashi Rungta, Carnegie Mellon University, Pittsburgh, PA --> | ||
| − | * Max Savery, US National Library of Medicine | + | <!-- * Max Savery, US National Library of Medicine --> |
<!-- * Prakhar Sharma, Indian Institute of Technology, Kharagpur --> | <!-- * Prakhar Sharma, Indian Institute of Technology, Kharagpur --> | ||
| − | * Chaitanya Shivade, IBM Research, Almaden, USA | + | <!-- * Chaitanya Shivade, IBM Research, Almaden, USA --> |
* Diana Sousa, University of Lisbon, Portugal | * Diana Sousa, University of Lisbon, Portugal | ||
| − | * Noha Seddik Tawfik, Arab Academy for Science and Technology, Egypt | + | <!-- * Noha Seddik Tawfik, Arab Academy for Science and Technology, Egypt --> |
| − | + | <!-- * Thy Thy Tran, National Centre for Text Mining and University of Manchester, UK --> | |
| − | + | <!-- * Sumithra Velupillai, King’s College London, UK --? | |
<!-- * Byron C. Wallace, University of Texas at Austin, USA --> | <!-- * Byron C. Wallace, University of Texas at Austin, USA --> | ||
| + | * Karin Verspoor, The University of Melbourne, Australia | ||
* Davy Weissenbacher, University of Pennsylvania, USA | * Davy Weissenbacher, University of Pennsylvania, USA | ||
* W John Wilbur, US National Library of Medicine | * W John Wilbur, US National Library of Medicine | ||
* Shankai Yan, US National Library of Medicine | * Shankai Yan, US National Library of Medicine | ||
| − | * Amir Yazdavar, Wright State University, USA | + | <!-- * Amir Yazdavar, Wright State University, USA --> |
| − | + | <!-- * Chrysoula Zerva, National Centre for Text Mining and University of Manchester, UK --> | |
* Ayah Zirikly, Clinical Center, National Institutes of Health, USA | * Ayah Zirikly, Clinical Center, National Institutes of Health, USA | ||
| − | + | <!-- * Seyedjamal Zolhavarieh, The University of Auckland, NZ --> | |
* Pierre Zweigenbaum, LIMSI - CNRS, France | * Pierre Zweigenbaum, LIMSI - CNRS, France | ||
Revision as of 08:45, 28 March 2020
BIONLP 2020
Seattle, Washington, July 9, 2020
An ACL 2020 Workshop associated with the SIGBIOMED special interest group
IMPORTANT DATES
- Submission deadline:
Friday, March 20, 2020New: Friday, April, 3, 2020, 11:59 PM Eastern US
https://www.softconf.com/acl2020/BioNLP2020/
- Notification of acceptance:
Friday, April 24, 2020New: Tuesday, April 28, 2020 - Camera-ready copy due from authors:
'Sunday, May 3, 2020New: Wednesday, May 6, 2020 - Workshop: July 9, 2020
Program Committee
* Sophia Ananiadou, National Centre for Text Mining and University of Manchester, UK * Emilia Apostolova, Language.ai, USA * Eiji Aramaki, University of Tokyo, Japan * Siamak Barzegar, Barcelona Supercomputing Center, Spain * Olivier Bodenreider, US National Library of Medicine * Leonardo Campillos Llanos, Universidad Autónoma de Madrid, Spain * Qingyu Chen, US National Library of Medicine * Fenia Christopoulou, National Centre for Text Mining and University of Manchester, UK * Aaron Cohen, Oregon Health & Science University, USA * Kevin Bretonnel Cohen, University of Colorado School of Medicine, USA * Brian Connolly, Kroger Digital, USA * Viviana Cotik, University of Buenos Aires, Argentina * Manirupa Das, Amazon Search, Seattle, WA, USA * Dina Demner-Fushman, US National Library of Medicine * Bart Desmet, Clinical Center, National Institutes of Health, USA * Travis Goodwin, The University of Texas at Dallas, USA * Natalia Grabar, CNRS, France * Cyril Grouin, LIMSI - CNRS, France * Tudor Groza, The Garvan Institute of Medical Research, Australia * Antonio Jimeno Yepes, IBM, Melbourne Area, Australia * Will Kearns, University of Washington, USA * Halil Kilicoglu, University of Illinois at Urbana-Champaign, USA * Ari Klein, University of Pennsylvania, USA * André Lamúrias, University of Lisbon, Portugal * Majid Latifi, Trinity College Dublin, Ireland * Alberto Lavelli, FBK-ICT, Italy * Ulf Leser, Humboldt-Universität zu Berlin, Germany * Gal Levy-Fix, Columbia University, NY * Maolin Li, National Centre for Text Mining and University of Manchester, UK * Ramon Maldonado, The University of Texas at Dallas, USA * Timothy Miller, Children’s Hospital Boston, USA * Danielle L Mowery, VA Salt Lake City Health Care System, USA * Aurelie Neveol, LIMSI - CNRS, France * Claire Nédellec, INRA, France * Mariana Neves, German Federal Institute for Risk Assessment, Germany * Denis Newman-Griffis, Clinical Center, National Institutes of Health, USA * Nhung Nguyen, The University of Manchester, UK * Karen O'Connor, University of Pennsylvania, USA * Naoaki Okazaki, Tokyo Institute of Technology, Japan * Yifan Peng, US National Library of Medicine * Laura Plaza, UNED, Madrid, Spain * Bastien Rance, European Hospital Georges Pompidou, France * Francisco J. Ribadas-Pena, University of Vigo, Spain * Fabio Rinaldi, University of Zurich, Switzerland * Kirk Roberts, The University of Texas Health Science Center at Houston, USA * Roland Roller, DFKI GmbH, Berlin, Germany * Diana Sousa, University of Lisbon, Portugal * Karin Verspoor, The University of Melbourne, Australia * Davy Weissenbacher, University of Pennsylvania, USA * W John Wilbur, US National Library of Medicine * Shankai Yan, US National Library of Medicine * Ayah Zirikly, Clinical Center, National Institutes of Health, USA * Pierre Zweigenbaum, LIMSI - CNRS, France
Organizers
Dina Demner-Fushman, US National Library of Medicine Kevin Bretonnel Cohen, University of Colorado School of Medicine Sophia Ananiadou, National Centre for Text Mining and University of Manchester, UK Jun-ichi Tsujii, National Institute of Advanced Industrial Science and Technology, Japan and University of Manchester, UK
WORKSHOP OVERVIEW AND SCOPE
The ACL BioNLP workshop associated with the SIGBIOMED special interest group has established itself as the primary venue for presenting foundational research in language processing for the biological and medical domains. The workshop serves as both a venue for bringing together researchers in bio- and clinical NLP and exposing these researchers to the mainstream ACL research, and a venue for informing the mainstream ACL researchers about the fast growing and important domain. The workshop will continue presenting work on a broad and interesting range of topics in NLP.
The active areas of research include, but are not limited to:
- Entity identification and normalization (linking) for a broad range of semantic categories
- Extraction of complex relations and events
- Discourse analysis
- Anaphora/coreference resolution
- Text mining / Literature based discovery
- Summarization
- Question Answering
- Resources and novel strategies for system testing and evaluation
- Infrastructures for biomedical text mining / Processing and annotation platforms
- Translating NLP research to practice
- Explainable models for biomedical NLP
- Multi-modal models for biomedical NLP
- Getting reproducible results
- BioNLP research in languages other than English
SUBMISSION INSTRUCTIONS
Two types of submissions are invited: full papers and short papers.
Full papers should not exceed eight (8) pages of text, plus unlimited references. Final versions of full papers will be given one additional page of content (up to 9 pages) so that reviewers' comments can be taken into account. Full papers are intended to be reports of original research. BioNLP aims to be the forum for interesting, innovative, and promising work involving biomedicine and language technology, whether or not yielding high performance at the moment. This by no means precludes our interest in and preference for mature results, strong performance, and thorough evaluation. Both types of research and combinations thereof are encouraged.
Short papers may consist of up to four (4) pages of content, plus unlimited references. Upon acceptance, short papers will still be given up to five (5) content pages in the proceedings. Appropriate short paper topics include preliminary results, application notes, descriptions of work in progress, etc.
Please see https://acl2020.org/calls/papers/ for templates.
Dual submission policy
Papers may NOT be submitted to the BioNLP 2020 workshop if they are or will be concurrently submitted to another meeting or publication.